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SRX2184738: fungal community Plot4 Riviere Blanche Nothofagus aequilateralis monodominant rainforest
1 ILLUMINA (Illumina MiSeq) run: 10,586 spots, 5.3M bases, 2.5Mb downloads

Design: sequencing library realised by PCR with Tag added to DNA previously amplified by 515f/806r for 16S and fITS7/ITS4 for ITS
Submitted by: Institut Agronomique neo-Caledonien (IAC)
Study: Soil microbial diversity of ultramafic substrates in New Caledonia
show Abstracthide Abstract
New Caledonia is an archipelago located in the South West Pacific and is recognized has a biodiversity hotspot. One third of this territory is recovered by ultramafic substrates, also called serpentine soils. Ultramafic outcrops harbour diverse vegetation types and remarkable plant diversity. Due to the high concentration of heavy metals in these types of soils, in particular nickel ore, the New Caledonian biodiversity is threatened by the increasing mining activity since more than one century. In this context, the project aim to characterize soil bacterial and fungal diversity in New Caledonian ultramafic substrates, and determine whether floristic composition, edaphic parameters and geographical factors affect this microbial diversity. Such approach will allow us to better understand the ecological functioning of these particular ecosystems and finally will permit to define biological indicators for conservation and ecological restoration purposes.
Sample: Riviere Blanche Nothofagus aequilateralis monodominant rainforest plot4
SAMN05786773 • SRS1708368 • All experiments • All runs
Organism: soil metagenome
Library:
Name: RBP4Na-ITS
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 10,586 spots, 5.3M bases, 2.5Mb
Run# of Spots# of BasesSizePublished
SRR428919410,5865.3M2.5Mb2017-01-01

ID:
3179954

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